PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01609g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 293aa    MW: 34362.7 Da    PI: 4.6716
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01609g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind86.73.1e-2732114297
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d+++++++sws+ +nsf+v+d++++a ++Lp+yFkh+nf+SFvRQLn+Y    v+ ++         weF+++ F
  Niben101Scf01609g00003.1  32 FLNKTYQLVDDPSTNDVVSWSRGNNSFIVWDPQTLAMNLLPRYFKHNNFSSFVRQLNTY----VNPDH---------WEFANEGF 103
                               9**********************************************************....55555.........******** PP

                               XXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkelleki 97 
                                +g+k+ll+k+
  Niben101Scf01609g00003.1 104 LRGNKHLLKKL 114
                               ********995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3125112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-2927113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-4528121IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-2332114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-143255IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-147082IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-148395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDHFGSIKEE FTFMSNMPQP MEGLHESGPP PFLNKTYQLV DDPSTNDVVS WSRGNNSFIV  60
WDPQTLAMNL LPRYFKHNNF SSFVRQLNTY VNPDHWEFAN EGFLRGNKHL LKKLALPIRR  120
QTKVLMMELV NLRQQQQANK SYLKSIEEKL KGTEMKQQQM MSFLAKAIQN PNFVQQIMQQ  180
KDKRKQLEEE INKKRRRPID QGPINIENEF NIKQESAQDY CDVYGFDDLE LEEDDYVDQK  240
AHIESGDKAI NEGFWEDLLN ENIGEYEMAL LGIEEEDMDS LSEHLDFLGS NLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-182311417126Heat shock factor protein 1
5d5v_B5e-182311417126Heat shock factor protein 1
5d5v_D5e-182311417126Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182196KRKQLEEEINKKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016498663.11e-175PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH83e-93HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A067KVM91e-105A0A067KVM9_JATCU; Uncharacterized protein
STRINGPOPTR_0008s15740.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-93heat shock transcription factor A6B